CDS
| Accession Number | TCMCG053C24823 |
| gbkey | CDS |
| Protein Id | XP_034219864.1 |
| Location | complement(join(26142929..26143102,26143668..26143722,26143810..26143856,26143948..26144004,26144104..26144218,26144330..26144411,26144520..26144604,26144676..26144795,26145033..26145083,26145183..26145248,26145367..26145414,26145512..26145560,26145650..26145703,26145820..26145879,26146052..26146110,26146191..26146307,26146401..26146412)) |
| Gene | LOC117631047 |
| GeneID | 117631047 |
| Organism | Prunus dulcis |
Protein
| Length | 416aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA631757 |
| db_source | XM_034363973.1 |
| Definition | flap endonuclease 1 isoform X1 [Prunus dulcis] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGTATAAAGGGTTTAACGAAGCTATTGGCGGACAATGCCCCAAAGGCCATGAAGGAGCAGAAATTCGAGAGCTACTTTGGCCGAAAGATTGCCATTGATGCTAGCATGAGCATCTATCAGTTTCTTATTGTTGTGGGAAGAAGTGGGACTGAGATGCTCACTAATGAGGCTGGTGAAGTTACTAGTCATCTGCAAGGCATGTTTTCCCGGACCATTAGGCTTCTGGAAGCTGGAATTAAGCCACTCTATGTATTTGACGGGAAGCCTCCAGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCAAAGAGAGCAGATGCTACTGAAGATTTGGCAGCAGCAGTGGAGGTTGGCAATAAGGAAGACATTGAGAAGTATAGTAAACGGACAGTAAAGGTGACAAAGCAGCACAATGACGACTGCAAAAGACTTCTAAGGCTCATGGGTGTGCCTGTAATTGAGGCTCCCTCAGAAGCAGAAGCACAGTGTGCTGCACTTTGCAAATCAGGAAAGGTTTATGCTGTGGCCTCTGAAGACATGGATTCCCTAACATTTGGAGCTCCTAGGTTTCTTCGTCATTTAATGGATCCTAGCTCAAGAAAAATCCCAGTCATGGAATTCGAAGTTGCCAAGGTTTTGGAGGAGCTAAATCTAACTATGGATCAATTCATTGACTTGTGCATTCTTTCCGGCTGCGATTATTGTGACAGTATCCGAGGGATTGGAGGACAGACAGCTTTGAAGCTCATCCGTCAACATGGCTCCATAGAGAATATACTGGAGAACATAAACAAAGAGAGGTACCAAATACCAGAGGATTGGCCATATCAAGAGGCTCGGAGGCTTTTTAAGGAACCAGTTGCTTTAAGTGATGAAGAGCAACTTGAGATTAAATGGATTGCTCCAGATGAAGAAGGACTGATTTCCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTGACAAAGGCAATAGAAAAAATTAAAGCAGCCAAGAACAAATCGTCACAGGGCAGACTAGAATCCTTTTTCAAACCAACTGCTAACCCATCTGTACCCATTAAACGGAAGGAAACCAAATGTGTGCTTAAATCTTCCAAACCAGCAATCAAGCATAAGATGTTCTGTCTGCAAGATTGTAATTCATTCAGGCCTACTGTCAGTGGCAGTATAAGACTGACAATTCTTGGTTTAGGCTTGAAGCACTCCACGCCATTAACCAGAGGTGTCTGTTTTGGCGCATGA |
| Protein: MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPLYVFDGKPPDLKKQELAKRYSKRADATEDLAAAVEVGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKVLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPVALSDEEQLEIKWIAPDEEGLISFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETKCVLKSSKPAIKHKMFCLQDCNSFRPTVSGSIRLTILGLGLKHSTPLTRGVCFGA |